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The mandatory locking work (which I haven't been able to test) aside, temporary table creation is broken with SQLite 3.7.16.2-1. 'CREATE TEMP TABLE foo (bar INT)' fails. cygwinGetTempname, called from getTempname, returns the correct temporary directory --- "/var/tmp/etilqs_z28HceqmzVr3ZO1" in my case -- but getTempname then appends another random string to this name, yielding "/var/tmp/etilqs_z28HceqmzVr3ZO1\\etilqs_rnPCuceSOgjfeTd". We then give this string directly to CreateFileW, which understandably fails to create the indicated file.
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