Index: bin/cygport.in
===================================================================
RCS file: /cvsroot/cygwin-ports/cygport/bin/cygport.in,v
retrieving revision 1.45
diff -u -r1.45 cygport.in
--- bin/cygport.in	4 Jan 2007 02:35:26 -0000	1.45
+++ bin/cygport.in	6 Jan 2007 01:01:22 -0000
@@ -796,7 +796,7 @@
 	fi
 
 	case "x$(grep -m 1 'GNU Autoconf' ${confdir}/configure | cut -d ' ' -f 6)" in
-		x2.60)
+		x2.60|x2.61)
 			confargs+=" --datarootdir=/usr/share --docdir=/usr/share/doc/${P}"
 			;;
 		*)
Index: autogen.sh
===================================================================
RCS file: /cvsroot/cygwin-ports/cygport/autogen.sh,v
retrieving revision 1.4
diff -u -r1.4 autogen.sh
--- autogen.sh	22 Nov 2006 04:44:58 -0000	1.4
+++ autogen.sh	6 Jan 2007 00:10:08 -0000
@@ -16,6 +16,12 @@
 }
 
 cd ${S}
+verbose rm -rf autom4te.cache/
+verbose rm -f bin/Makefile.in  data/Makefile.in 
+verbose rm -f doc/Makefile.in  lib/Makefile.in
+verbose rm -f Makefile.in      test/Makefile.in
+verbose rm -f aclocal.m4
+
 verbose aclocal --force
 verbose autoconf --force
 verbose automake --add-missing --copy --force-missing