loop through folders

[smanna]

Hello I am trying to write a script. This is the thing, I want to loop
through all folders in a certain folder and send all files in these folders
to a java program. The files are somewhere in the neighbourhood of 170.000.
the setup is:
                            Home
cygwin.sh         program.java                                Folder
                                                      folder                        
folder  ...
                                              folder   folder  ...           
folder   folder  ...
                                              files      files    ...            
files      files    ...

help would be completely fantastic!!
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