error while loading shared libraries: ?: cannot open shared object file: No such file or directory
marco atzeri
marco.atzeri@gmail.com
Tue Mar 13 22:45:00 GMT 2012
On 3/13/2012 11:10 PM, Ted wrote:
> I see this error in 3 different products either so I can use them, or develop
> them.
>
> 1) Atlas - I am trying to build it, with Lapack, to squeeze a little more speed
>
> out of my number crunching code. But here is precisely what happens:
>
> Ted@Ted-acer-i7w7 ~/ATLAS/atlasbuild
> $ ../configure -Ss lasrc ../../lapack-3.4.0/SRC -Si latune 1
> gcc -I/cygdrive/c/cygwin//home/Ted/ATLAS/atlasbuild/..//CONFIG/include -g -w -c
>
> /cygdrive/c/cygwin//home/Ted/ATLAS/atlasbuild/..//CONFIG/src/atlconf_misc.c
> gcc -I/cygdrive/c/cygwin//home/Ted/ATLAS/atlasbuild/..//CONFIG/include -g -w -o
>
> xconfig /cygdrive/c/cygwin//home/Ted/ATLAS/atlasbuild/..//CONFIG/src/config.c
> atlconf_misc.o
> ./xconfig -d s /cygdrive/c/cygwin//home/Ted/ATLAS/atlasbuild/../ -d b
> /cygdrive/c/cygwin//home/Ted/ATLAS/atlasbuild -Ss lasrc ../../lapack-3.4.0/SRC
> -Si latune 1
> /home/Ted/ATLAS/atlasbuild/xconfig.exe: error while loading shared libraries: ?:
>
> cannot open shared object file: No such file or directory
> xconfig exited with 127
>
> Ted@Ted-acer-i7w7 ~/ATLAS/atlasbuild
> $ cygcheck ./xconfig
> C:\cygwin\home\Ted\ATLAS\atlasbuild\xconfig.exe
> C:\cygwin\bin\cygwin1.dll
> C:\Windows\system32\KERNEL32.dll
> C:\Windows\system32\API-MS-Win-Core-RtlSupport-L1-1-0.dll
> C:\Windows\system32\ntdll.dll
> C:\Windows\system32\KERNELBASE.dll
> C:\Windows\system32\API-MS-Win-Core-ProcessThreads-L1-1-0.dll
> C:\Windows\system32\API-MS-Win-Core-Heap-L1-1-0.dll
> C:\Windows\system32\API-MS-Win-Core-Memory-L1-1-0.dll
> C:\Windows\system32\API-MS-Win-Core-Handle-L1-1-0.dll
> C:\Windows\system32\API-MS-Win-Core-Synch-L1-1-0.dll
> C:\Windows\system32\API-MS-Win-Core-File-L1-1-0.dll
> C:\Windows\system32\API-MS-Win-Core-IO-L1-1-0.dll
> C:\Windows\system32\API-MS-Win-Core-ThreadPool-L1-1-0.dll
> C:\Windows\system32\API-MS-Win-Core-LibraryLoader-L1-1-0.dll
> C:\Windows\system32\API-MS-Win-Core-NamedPipe-L1-1-0.dll
> C:\Windows\system32\API-MS-Win-Core-Misc-L1-1-0.dll
> C:\Windows\system32\API-MS-Win-Core-SysInfo-L1-1-0.dll
> C:\Windows\system32\API-MS-Win-Core-Localization-L1-1-0.dll
> C:\Windows\system32\API-MS-Win-Core-ProcessEnvironment-L1-1-0.dll
> C:\Windows\system32\API-MS-Win-Core-String-L1-1-0.dll
> C:\Windows\system32\API-MS-Win-Core-Debug-L1-1-0.dll
> C:\Windows\system32\API-MS-Win-Core-ErrorHandling-L1-1-0.dll
> C:\Windows\system32\API-MS-Win-Core-Fibers-L1-1-0.dll
> C:\Windows\system32\API-MS-Win-Core-Util-L1-1-0.dll
> C:\Windows\system32\API-MS-Win-Core-Profile-L1-1-0.dll
> C:\Windows\system32\API-MS-Win-Security-Base-L1-1-0.dll
>
> Of course I checked, and all the required DLLs exist in he expected locations.
>
> 2) gsl: I need to use it to do some stats in C++ (and ultimately I want to build
>
> it to use ATLAS). But the last test fails with the following:
>
> make[1]: Entering directory `/home/Ted/gsl-1.15/statistics'
> make test.exe
> make[2]: Entering directory `/home/Ted/gsl-1.15/statistics'
> gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT test.o -MD -MP -MF
> .deps/test.Tpo -c -o test.o test.c
> mv -f .deps/test.Tpo .deps/test.Po
> gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT test_nist.o -MD -MP -MF
> .deps/test_nist.Tpo -c -o test_nist.o test_nist.c
> mv -f .deps/test_nist.Tpo .deps/test_nist.Po
> /bin/sh ../libtool --tag=CC --mode=link gcc -g -O2 -o test.exe test.o
> test_nist.o libgslstatistics.la ../sort/libgslsort.la
> ../ieee-utils/libgslieeeutils.la ../err/libgslerr.la ../test/libgsltest.la
> ../sys/libgslsys.la ../utils/libutils.la -lm
> libtool: link: gcc -g -O2 -o .libs/test.exe test.o test_nist.o
> ./.libs/libgslstatistics.a ../sort/.libs/libgslsort.a
> ../ieee-utils/.libs/libgslieeeutils.a ../err/.libs/libgslerr.a
> ../test/.libs/libgsltest.a ..
> /sys/.libs/libgslsys.a ../utils/.libs/libutils.a
> /home/Ted/gsl-1.15/statistics/test.exe: error while loading shared libraries:
> ?:cannot open shared object file: No such file or directory
> make[2]: Leaving directory `/home/Ted/gsl-1.15/statistics'
> make check-TESTS
> make[2]: Entering directory `/home/Ted/gsl-1.15/statistics'
> /home/Ted/gsl-1.15/statistics/test.exe: error while loading shared libraries:
> ?:cannot open shared object file: No such file or directory
> FAIL: test.exe
> ==================
> 1 of 1 test failed
> ==================
> Makefile:436: recipe for target `check-TESTS' failed
> make[2]: *** [check-TESTS] Error 1
> make[2]: Leaving directory `/home/Ted/gsl-1.15/statistics'
> Makefile:558: recipe for target `check-am' failed
> make[1]: *** [check-am] Error 2
> make[1]: Leaving directory `/home/Ted/gsl-1.15/statistics'
> Makefile:656: recipe for target `check-recursive' failed
> make: *** [check-recursive] Error 1
>
> Observe, the line just above "FAIL: test.exe" is the same error that I get with
>
> ATLAS! Here are he DLLs that test.exe depends on:
>
> Ted@Ted-acer-i7w7 ~/gsl-1.15/statistics
> $ cygcheck ./test.exe
> C:\cygwin\home\Ted\gsl-1.15\statistics\test.exe
> C:\cygwin\bin\cygwin1.dll
> C:\Windows\system32\KERNEL32.dll
> C:\Windows\system32\API-MS-Win-Core-RtlSupport-L1-1-0.dll
> C:\Windows\system32\ntdll.dll
> C:\Windows\system32\KERNELBASE.dll
> C:\Windows\system32\API-MS-Win-Core-ProcessThreads-L1-1-0.dll
> C:\Windows\system32\API-MS-Win-Core-Heap-L1-1-0.dll
> C:\Windows\system32\API-MS-Win-Core-Memory-L1-1-0.dll
> C:\Windows\system32\API-MS-Win-Core-Handle-L1-1-0.dll
> C:\Windows\system32\API-MS-Win-Core-Synch-L1-1-0.dll
> C:\Windows\system32\API-MS-Win-Core-File-L1-1-0.dll
> C:\Windows\system32\API-MS-Win-Core-IO-L1-1-0.dll
> C:\Windows\system32\API-MS-Win-Core-ThreadPool-L1-1-0.dll
> C:\Windows\system32\API-MS-Win-Core-LibraryLoader-L1-1-0.dll
> C:\Windows\system32\API-MS-Win-Core-NamedPipe-L1-1-0.dll
> C:\Windows\system32\API-MS-Win-Core-Misc-L1-1-0.dll
> C:\Windows\system32\API-MS-Win-Core-SysInfo-L1-1-0.dll
> C:\Windows\system32\API-MS-Win-Core-Localization-L1-1-0.dll
> C:\Windows\system32\API-MS-Win-Core-ProcessEnvironment-L1-1-0.dll
> C:\Windows\system32\API-MS-Win-Core-String-L1-1-0.dll
> C:\Windows\system32\API-MS-Win-Core-Debug-L1-1-0.dll
> C:\Windows\system32\API-MS-Win-Core-ErrorHandling-L1-1-0.dll
> C:\Windows\system32\API-MS-Win-Core-Fibers-L1-1-0.dll
> C:\Windows\system32\API-MS-Win-Core-Util-L1-1-0.dll
> C:\Windows\system32\API-MS-Win-Core-Profile-L1-1-0.dll
> C:\Windows\system32\API-MS-Win-Security-Base-L1-1-0.dll
>
>
> 3) My own test program (I am trying to familiarize myself with GSL). Here is
>
> the relevant output:
>
> Ted@Ted-acer-i7w7 ~/New.Task/NKs-sd-02-24-12/NKs-sd/tests
> $ ./test.gsl
> /home/Ted/New.Task/NKs-sd-02-24-12/NKs-sd/tests/test.gsl.exe: error while
>
> loading shared libraries: ?: cannot open shared object file: No such file or
>
> directory
>
> Ted@Ted-acer-i7w7 ~/New.Task/NKs-sd-02-24-12/NKs-sd/tests
> $ cygcheck ./test.gsl.exe
> C:\cygwin\home\Ted\New.Task\NKs-sd-02-24-12\NKs-sd\tests\test.gsl.exe
> C:\cygwin\bin\cygwin1.dll
> C:\Windows\system32\KERNEL32.dll
> C:\Windows\system32\API-MS-Win-Core-RtlSupport-L1-1-0.dll
> C:\Windows\system32\ntdll.dll
> C:\Windows\system32\KERNELBASE.dll
> C:\Windows\system32\API-MS-Win-Core-ProcessThreads-L1-1-0.dll
> C:\Windows\system32\API-MS-Win-Core-Heap-L1-1-0.dll
> C:\Windows\system32\API-MS-Win-Core-Memory-L1-1-0.dll
> C:\Windows\system32\API-MS-Win-Core-Handle-L1-1-0.dll
> C:\Windows\system32\API-MS-Win-Core-Synch-L1-1-0.dll
> C:\Windows\system32\API-MS-Win-Core-File-L1-1-0.dll
> C:\Windows\system32\API-MS-Win-Core-IO-L1-1-0.dll
> C:\Windows\system32\API-MS-Win-Core-ThreadPool-L1-1-0.dll
> C:\Windows\system32\API-MS-Win-Core-LibraryLoader-L1-1-0.dll
> C:\Windows\system32\API-MS-Win-Core-NamedPipe-L1-1-0.dll
> C:\Windows\system32\API-MS-Win-Core-Misc-L1-1-0.dll
> C:\Windows\system32\API-MS-Win-Core-SysInfo-L1-1-0.dll
> C:\Windows\system32\API-MS-Win-Core-Localization-L1-1-0.dll
> C:\Windows\system32\API-MS-Win-Core-ProcessEnvironment-L1-1-0.dll
> C:\Windows\system32\API-MS-Win-Core-String-L1-1-0.dll
> C:\Windows\system32\API-MS-Win-Core-Debug-L1-1-0.dll
> C:\Windows\system32\API-MS-Win-Core-ErrorHandling-L1-1-0.dll
> C:\Windows\system32\API-MS-Win-Core-Fibers-L1-1-0.dll
> C:\Windows\system32\API-MS-Win-Core-Util-L1-1-0.dll
> C:\Windows\system32\API-MS-Win-Core-Profile-L1-1-0.dll
> C:\Windows\system32\API-MS-Win-Security-Base-L1-1-0.dll
> C:\cygwin\bin\cyggsl-0.dll
> C:\cygwin\lib\lapack\cygblas-0.dll
> C:\cygwin\bin\cyggfortran-3.dll
> C:\cygwin\bin\cyggcc_s-1.dll
> C:\cygwin\bin\cygstdc++-6.dll
>
> Ted@Ted-acer-i7w7 ~/New.Task/NKs-sd-02-24-12/NKs-sd/tests
> $ cygcheck ./test.sd.exe
> C:\cygwin\home\Ted\New.Task\NKs-sd-02-24-12\NKs-sd\tests\test.sd.exe
> C:\cygwin\bin\cygwin1.dll
> C:\Windows\system32\KERNEL32.dll
> C:\Windows\system32\API-MS-Win-Core-RtlSupport-L1-1-0.dll
> C:\Windows\system32\ntdll.dll
> C:\Windows\system32\KERNELBASE.dll
> C:\Windows\system32\API-MS-Win-Core-ProcessThreads-L1-1-0.dll
> C:\Windows\system32\API-MS-Win-Core-Heap-L1-1-0.dll
> C:\Windows\system32\API-MS-Win-Core-Memory-L1-1-0.dll
> C:\Windows\system32\API-MS-Win-Core-Handle-L1-1-0.dll
> C:\Windows\system32\API-MS-Win-Core-Synch-L1-1-0.dll
> C:\Windows\system32\API-MS-Win-Core-File-L1-1-0.dll
> C:\Windows\system32\API-MS-Win-Core-IO-L1-1-0.dll
> C:\Windows\system32\API-MS-Win-Core-ThreadPool-L1-1-0.dll
> C:\Windows\system32\API-MS-Win-Core-LibraryLoader-L1-1-0.dll
> C:\Windows\system32\API-MS-Win-Core-NamedPipe-L1-1-0.dll
> C:\Windows\system32\API-MS-Win-Core-Misc-L1-1-0.dll
> C:\Windows\system32\API-MS-Win-Core-SysInfo-L1-1-0.dll
> C:\Windows\system32\API-MS-Win-Core-Localization-L1-1-0.dll
> C:\Windows\system32\API-MS-Win-Core-ProcessEnvironment-L1-1-0.dll
> C:\Windows\system32\API-MS-Win-Core-String-L1-1-0.dll
> C:\Windows\system32\API-MS-Win-Core-Debug-L1-1-0.dll
> C:\Windows\system32\API-MS-Win-Core-ErrorHandling-L1-1-0.dll
> C:\Windows\system32\API-MS-Win-Core-Fibers-L1-1-0.dll
> C:\Windows\system32\API-MS-Win-Core-Util-L1-1-0.dll
> C:\Windows\system32\API-MS-Win-Core-Profile-L1-1-0.dll
> C:\Windows\system32\API-MS-Win-Security-Base-L1-1-0.dll
> C:\cygwin\bin\cyggcc_s-1.dll
> C:\cygwin\bin\cygstdc++-6.dll
>
> Ted@Ted-acer-i7w7 ~/New.Task/NKs-sd-02-24-12/NKs-sd/tests
> $
>
> Now, I am baffled, as I ran the check on test.sd because it had previously
>
> worked. But now, after I let cugwyn's setup update gcc, it too fails. here
> is what GCC now reports itself to be:
>
> Ted@Ted-acer-i7w7 ~/New.Task/NKs-sd-02-24-12/NKs-sd/tests
> $ gcc -v
> Using built-in specs.
> COLLECT_GCC=gcc
> COLLECT_LTO_WRAPPER=/usr/lib/gcc/i686-pc-cygwin/4.5.3/lto-wrapper.exe
> Target: i686-pc-cygwin
>
> (some configuration detail you undoubtedly know betteer than IThread model: posix
> gcc version 4.5.3 (GCC)
>
> I did notice, during an install of a couple extra libraries, that setup popped
>
> open a message saying there was a newer version of setup, but I ignored it as
>
> that ought not break an installatin that had been worked for quite a while; or
>
> so I expected.
>
> So, then, how do I fix this?
>
> Thanks
>
> Ted
>
> PS: Your editor complained about lines longer than 80 characters and demanded
> I change that before it would post, so please excuse the mangled formatting.
>
>
>
you forgot this point:
> Problem reports: http://cygwin.com/problems.html
we have no clue of wich package versions you are running.
Suggestion from my side:
- assure to have the latest package versions.
Eventually try also one one the last cygwin snapshots as there
is additional diagnostic for loading dll.
- rebaseall (from dash shell of course)
- why you need to compile gsl ? there is already a 1.15-1
package for it.
- Atlas is a nasty beast to compile. Looks on the source package I
prepared for 3.68 + lapack-3.4.0
http://matzeri.altervista.org/cygwin-1.7/atlas/index.html
It should make the effort simpler using cygport to build the package
Regards
Marco
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